STRINGSTRING
Bra007661 protein (Brassica rapa) - STRING interaction network
"Bra007661" - AT3G62100 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007661AT3G62100 (E=8e-062) IAA30 | IAA30 (INDOLE-3-ACETIC ACID INDUCIBLE 30); transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (177 aa)    
Predicted Functional Partners:
ARF5-1
AT1G19850 (E=0.0) MP, ARF5, IAA24 | MP (MONOPTEROS); transcription factor ; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (867 aa)
       
  0.986
Bra002729
AT5G57420 (E=7e-038) IAA33 | IAA33 (INDOLE-3-ACETIC ACID INDUCIBLE 33); transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (160 aa)
       
 
  0.985
ARF19-2
AT1G19220 (E=4e-261) ARF19, IAA22, ARF11 | ARF19 (AUXIN RESPONSE FACTOR 19); DNA binding / transcription factor ; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (1049 aa)
       
0.983
ARF11
AT2G46530 (E=4e-271) ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11); transcription factor ; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (584 aa)
       
0.981
Bra011045
AT4G28640 (E=2e-093) IAA11 | IAA11 (INDOLE-3-ACETIC ACID INDUCIBLE 11); transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (243 aa)
       
 
0.979
Bra026166
AT1G15050 (E=5e-045) IAA34 | IAA34 (INDOLE-3-ACETIC ACID INDUCIBLE 34); transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (164 aa)
       
 
0.978
Bra040476
AT2G46990 (E=1e-070) IAA20 | IAA20 (INDOLE-3-ACETIC ACID INDUCIBLE 20); transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (174 aa)
       
 
0.978
Bra040398
AT3G04730 (E=9e-108) IAA16 | IAA16; transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (231 aa)
       
 
0.978
Bra035185
AT1G80390 (E=5e-065) IAA15 | IAA15 (INDOLE-3-ACETIC ACID INDUCIBLE 15); transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (188 aa)
       
 
0.978
Bra022934
AT2G33310 (E=1e-098) IAA13 | IAA13; transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (242 aa)
       
 
0.978
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (13%) [HD]