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Bra007662 protein (Brassica rapa) - STRING interaction network
"Bra007662" - AT3G62110 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007662AT3G62110 (E=1e-191) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (460 aa)    
Predicted Functional Partners:
Bra040910
AT5G07420 (E=8e-153) | pectinesterase family protein (295 aa)
       
  0.568
Bra040563
AT1G53830 (E=1e-282) ATPME2 | ATPME2; pectinesterase ; Acts in the modification of cell walls via demethylesterification of cell wall pectin (585 aa)
       
  0.568
Bra040562
AT1G53840 (E=5e-152) ATPME1 | ATPME1; pectinesterase ; Acts in the modification of cell walls via demethylesterification of cell wall pectin (287 aa)
       
  0.568
Bra040532
AT3G05610 (E=2e-164) | pectinesterase family protein (343 aa)
       
  0.568
Bra040474
AT2G47040 (E=7e-280) VGD1 | VGD1 (VANGUARD1); enzyme inhibitor/ pectinesterase ; Acts in the modification of cell walls via demethylesterification of cell wall pectin (596 aa)
       
  0.568
Bra040320
AT2G45220 (E=1e-264) | pectinesterase family protein (510 aa)
       
  0.568
Bra040293
AT3G06830 (E=3e-252) | pectinesterase family protein ; Acts in the modification of cell walls via demethylesterification of cell wall pectin (560 aa)
       
  0.568
Bra039694
AT1G53840 (E=4e-266) ATPME1 | ATPME1; pectinesterase ; Acts in the modification of cell walls via demethylesterification of cell wall pectin (586 aa)
       
  0.568
Bra039421
AT3G05610 (E=2e-303) | pectinesterase family protein (616 aa)
       
  0.568
Bra039420
AT2G47550 (E=4e-136) | pectinesterase family protein (559 aa)
       
  0.568
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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