STRINGSTRING
Bra007664 protein (Brassica rapa) - STRING interaction network
"Bra007664" - AT3G62140 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007664AT3G62140 (E=6e-067) | unknown protein (204 aa)    
Predicted Functional Partners:
Bra023482
AT5G14710 (E=2e-060) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Proteasome assembly chaperone 3 (InterPro-IPR018788); Has 85 Blast hits to 85 proteins in 29 species- Archae - 0; Bacteria - 0; Metazoa - 53; Fungi - 2; Plants - 27; Viruses - 0; Other Eukaryotes - 3 (source- NCBI BLink). (124 aa)
       
      0.618
Bra006264
AT5G14710 (E=1e-061) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Proteasome assembly chaperone 3 (InterPro-IPR018788); Has 85 Blast hits to 85 proteins in 29 species- Archae - 0; Bacteria - 0; Metazoa - 53; Fungi - 2; Plants - 27; Viruses - 0; Other Eukaryotes - 3 (source- NCBI BLink). (124 aa)
       
      0.618
Bra040713
AT1G47250 (E=1e-015) PAF2 | PAF2; endopeptidase/ peptidase/ threonine-type endopeptidase (132 aa)
       
      0.615
Bra035332
AT5G42790 (E=6e-131) PAF1, ATPSM30 | PAF1; endopeptidase/ peptidase/ threonine-type endopeptidase (271 aa)
       
      0.615
Bra027456
AT5G42790 (E=2e-131) PAF1, ATPSM30 | PAF1; endopeptidase/ peptidase/ threonine-type endopeptidase (275 aa)
       
      0.615
Bra014068
AT1G47250 (E=1e-130) PAF2 | PAF2; endopeptidase/ peptidase/ threonine-type endopeptidase (270 aa)
       
      0.615
Bra038623
AT3G16940 (E=2e-014) | calmodulin-binding protein (372 aa)
       
      0.612
Bra038534
AT2G22300 (E=4e-266) CAMTA3, SR1 | SR1 (SIGNAL RESPONSIVE 1); calmodulin binding / transcription regulator (930 aa)
       
      0.612
Bra038040
AT4G16150 (E=0.0) | calmodulin binding / transcription regulator (919 aa)
       
      0.612
Bra037769
AT5G09410 (E=0.0) EICBP.B | EICBP.B (ETHYLENE INDUCED CALMODULIN BINDING PROTEIN); calmodulin binding / transcription activator/ transcription regulator (1028 aa)
       
      0.612
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (6%) [ZH]