STRINGSTRING
Bra007670 protein (Brassica rapa) - STRING interaction network
"Bra007670" - AT3G62300 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007670AT3G62300 (E=1e-103) | agenet domain-containing protein (656 aa)    
Predicted Functional Partners:
Bra009226
AT5G06780 (E=1e-125) | emsy N terminus domain-containing protein / ENT domain-containing protein (309 aa)
           
  0.573
Bra008863
AT5G13020 (E=2e-187) | emsy N terminus domain-containing protein / ENT domain-containing protein (394 aa)
           
  0.573
Bra001437
AT3G12140 (E=4e-158) | emsy N terminus domain-containing protein / ENT domain-containing protein (334 aa)
           
  0.540
Bra028851
AT5G03080 (E=5e-107) | phosphatidic acid phosphatase-related / PAP2-related (222 aa)
           
  0.504
Bra009551
AT5G03080 (E=1e-101) | phosphatidic acid phosphatase-related / PAP2-related (226 aa)
           
  0.504
Bra025278
AT3G27460 (E=1e-122) | unknown protein (270 aa)
           
  0.503
Bra023388
AT5G13020 (E=8e-156) | emsy N terminus domain-containing protein / ENT domain-containing protein (582 aa)
           
  0.483
Bra006175
AT5G13020 (E=8e-175) | emsy N terminus domain-containing protein / ENT domain-containing protein (385 aa)
           
  0.483
Bra004832
AT2G44440 (E=1e-142) | emsy N terminus domain-containing protein / ENT domain-containing protein (410 aa)
           
  0.483
Bra028701
AT5G07350 (E=0.0) | tudor domain-containing protein / nuclease family protein (988 aa)
           
  0.410
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (8%) [HD]