STRINGSTRING
Bra007675 protein (Brassica rapa) - STRING interaction network
"Bra007675" - AT3G62360 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007675AT3G62360 (E=0.0) | carbohydrate binding (1197 aa)    
Predicted Functional Partners:
Bra032344
AT1G29900 (E=0.0) CARB | CARB (CARBAMOYL PHOSPHATE SYNTHETASE B); ATP binding / carbamoyl-phosphate synthase/ catalytic (1176 aa)
     
      0.623
Bra034019
AT5G40480 (E=1e-021) EMB3012 | EMB3012 (embryo defective 3012) (396 aa)
     
      0.622
Bra028460
AT5G40480 (E=0.0) EMB3012 | EMB3012 (embryo defective 3012) (1927 aa)
     
      0.622
Bra015012
AT3G24090 (E=1e-247) | glutamine-fructose-6-phosphate transaminase (isomerizing)/ sugar binding / transaminase (673 aa)
     
      0.622
Bra001926
AT3G24090 (E=2e-248) | glutamine-fructose-6-phosphate transaminase (isomerizing)/ sugar binding / transaminase (680 aa)
     
      0.622
Bra035008
AT3G44330 (E=4e-263) | INVOLVED IN- protein processing; LOCATED IN- mitochondrion, endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED IN- 25 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Nicalin (InterPro-IPR016574), EF-HAND 1 (InterPro-IPR018247), Nicastrin (InterPro-IPR008710); Has 192 Blast hits to 192 proteins in 79 species- Archae - 6; Bacteria - 5; Metazoa - 124; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 31 (source- NCBI BLink). ; May antagonize Nodal signaling and subsequent organization of axial structures during mesoder [...] (563 aa)
     
 
  0.566
Bra019457
AT3G44330 (E=7e-266) | INVOLVED IN- protein processing; LOCATED IN- mitochondrion, endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED IN- 25 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Nicalin (InterPro-IPR016574), EF-HAND 1 (InterPro-IPR018247), Nicastrin (InterPro-IPR008710); Has 192 Blast hits to 192 proteins in 79 species- Archae - 6; Bacteria - 5; Metazoa - 124; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 31 (source- NCBI BLink). ; May antagonize Nodal signaling and subsequent organization of axial structures during mesoder [...] (562 aa)
     
 
  0.566
Bra007866
AT3G27740 (E=4e-220) CARA | CARA (CARBAMOYL PHOSPHATE SYNTHETASE A); carbamoyl-phosphate synthase (glutamine-hydrolyzing)/ carbamoyl-phosphate synthase/ catalytic (424 aa)
     
      0.506
Bra004395
AT3G27740 (E=6e-229) CARA | CARA (CARBAMOYL PHOSPHATE SYNTHETASE A); carbamoyl-phosphate synthase (glutamine-hydrolyzing)/ carbamoyl-phosphate synthase/ catalytic (430 aa)
     
      0.506
Bra038263
AT3G20330 (E=3e-106) | aspartate carabmoyltransferase, chloroplast / aspartate transcarbamylase / ATCase (PYRB) (363 aa)
       
      0.506
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (5%) [ZH]