STRINGSTRING
Bra007683 protein (Brassica rapa) - STRING interaction network
"Bra007683" - AT3G62550 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007683AT3G62550 (E=4e-083) | universal stress protein (USP) family protein (163 aa)    
Predicted Functional Partners:
Bra023006
AT2G35260 (E=2e-154) | unknown protein (376 aa)
           
  0.476
Bra011319
AT4G32060 (E=6e-221) | calcium-binding EF hand family protein (494 aa)
           
  0.476
Bra007149
AT3G55240 (E=8e-040) | Overexpression leads to PEL (Pseudo-Etiolation in Light) phenotype. (95 aa)
           
  0.476
Bra005356
AT2G35260 (E=1e-170) | unknown protein (374 aa)
           
  0.476
Bra013259
AT4G17840 (E=5e-130) | unknown protein (405 aa)
           
  0.447
Bra014195
AT1G49500 (E=1e-022) | unknown protein (63 aa)
           
  0.420
Bra040802
AT4G13450 (E=9e-083) | universal stress protein (USP) family protein (220 aa)
           
  0.406
Bra036356
AT3G25930 (E=5e-060) | universal stress protein (USP) family protein (150 aa)
           
  0.406
Bra034874
AT4G13450 (E=1e-073) | universal stress protein (USP) family protein (222 aa)
           
  0.406
Bra031943
AT5G63940 (E=4e-195) | protein kinase family protein (686 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (7%) [HD]