STRINGSTRING
Bra007685 protein (Brassica rapa) - STRING interaction network
"Bra007685" - AT3G62580 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007685AT3G62580 (E=1e-112) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- endomembrane system; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; BEST Arabidopsis thaliana protein match is- late embryogenesis abundant domain-containing protein / LEA domain-containing protein (TAIR-AT1G72100.1); Has 237 Blast hits to 236 proteins in 85 species- Archae - 0; Bacteria - 4; Metazoa - 103; Fungi - 69; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (213 aa)    
Predicted Functional Partners:
Bra022040
AT5G46530 (E=6e-071) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- endomembrane system, membrane; CONTAINS InterPro DOMAIN/s- AWPM-19-like (InterPro-IPR008390); BEST Arabidopsis thaliana protein match is- AWPM-19-like membrane family protein (TAIR-AT1G29520.1); Has 98 Blast hits to 98 proteins in 14 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (157 aa)
           
  0.605
Bra040043
AT3G07960 (E=0.0) | phosphatidylinositol-4-phosphate 5-kinase family protein (713 aa)
       
      0.515
Bra037379
AT4G01190 (E=7e-172) ATPIPK10 | ATPIPK10 (Arabidopsis phosphatidylinositol phosphate kinase 10); 1-phosphatidylinositol-4-phosphate 5-kinase (631 aa)
       
      0.515
Bra033262
AT1G01460 (E=2e-213) ATPIPK11, PIPK11 | PIPK11; 1-phosphatidylinositol-4-phosphate 5-kinase/ phosphatidylinositol phosphate kinase (425 aa)
       
      0.515
Bra031742
AT1G60890 (E=2e-308) | phosphatidylinositol-4-phosphate 5-kinase family protein (693 aa)
       
      0.515
Bra029805
AT3G09920 (E=0.0) PIP5K9 | PIP5K9 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE); 1-phosphatidylinositol-4-phosphate 5-kinase/ ATP binding / phosphatidylinositol phosphate kinase (817 aa)
       
      0.515
Bra027121
AT1G60890 (E=0.0) | phosphatidylinositol-4-phosphate 5-kinase family protein (779 aa)
       
      0.515
Bra019892
AT1G10900 (E=0.0) | phosphatidylinositol-4-phosphate 5-kinase family protein (759 aa)
       
      0.515
Bra016396
AT1G21980 (E=0.0) ATPIP5K1, ATPIPK1 | ATPIP5K1 (PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE 1); 1-phosphatidylinositol-4-phosphate 5-kinase/ actin filament binding / actin monomer binding / phosphatidylinositol phosphate kinase (734 aa)
       
      0.515
Bra014660
AT3G56960 (E=0.0) PIP5K4 | PIP5K4 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE 4); 1-phosphatidylinositol-4-phosphate 5-kinase (773 aa)
       
      0.515
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (7%) [HD]