STRINGSTRING
Bra007692 protein (Brassica rapa) - STRING interaction network
"Bra007692" - AT3G62650 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007692AT3G62650 (E=2e-058) | unknown protein (145 aa)    
Predicted Functional Partners:
Bra032401
AT3G08570 (E=2e-261) | protein binding / signal transducer (607 aa)
           
  0.544
Bra015925
AT1G74240 (E=1e-163) | mitochondrial substrate carrier family protein (360 aa)
           
  0.544
Bra034305
AT2G26360 (E=1e-144) | binding (370 aa)
           
  0.543
Bra021617
AT2G30160 (E=8e-157) | mitochondrial substrate carrier family protein (326 aa)
           
  0.502
Bra018332
AT2G30160 (E=3e-143) | mitochondrial substrate carrier family protein (333 aa)
           
  0.502
Bra034186
AT4G03115 (E=8e-153) | binding (314 aa)
           
  0.487
Bra007181
AT3G55640 (E=2e-125) | mitochondrial substrate carrier family protein (356 aa)
           
  0.487
Bra024342
AT5G64970 (E=6e-168) | mitochondrial substrate carrier family protein (418 aa)
           
  0.487
Bra015545
AT1G07030 (E=1e-159) | mitochondrial substrate carrier family protein (328 aa)
           
  0.478
Bra037460
AT5G48800 (E=3e-269) | phototropic-responsive NPH3 family protein (620 aa)
           
  0.459
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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