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Bra007700 protein (Brassica rapa) - STRING interaction network
"Bra007700" - AT3G62770 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007700AT3G62770 (E=1e-159) AtATG18a | AtATG18a (430 aa)    
Predicted Functional Partners:
Bra021999
AT5G45900 (E=0.0) APG7, ATAPG7, ATG7, ATATG7 | APG7 (AUTOPHAGY 7); APG8 activating enzyme (697 aa)
     
 
  0.796
Bra022393
AT3G19190 (E=0.0) ATATG2, ATG2 | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- ATG2, C-terminal (InterPro-IPR015412); Has 603 Blast hits to 514 proteins in 156 species- Archae - 0; Bacteria - 19; Metazoa - 326; Fungi - 168; Plants - 38; Viruses - 0; Other Eukaryotes - 52 (source- NCBI BLink). (1878 aa)
     
 
  0.755
Bra003466
AT3G61710 (E=8e-133) ATATG6 | autophagy protein Apg6 family (748 aa)
       
 
  0.723
Bra017117
AT2G38470 (E=1e-091) WRKY33, ATWRKY33 | WRKY33; transcription factor (463 aa)
       
 
  0.622
Bra005104
AT2G38470 (E=3e-093) WRKY33, ATWRKY33 | WRKY33; transcription factor (457 aa)
       
 
  0.622
Bra000064
AT2G38470 (E=4e-154) WRKY33, ATWRKY33 | WRKY33; transcription factor (473 aa)
       
 
  0.622
Bra039543
AT3G21540 (E=1e-264) | transducin family protein / WD-40 repeat family protein (944 aa)
       
      0.612
Bra033645
AT5G42850 (E=1e-063) | INVOLVED IN- cell redox homeostasis; LOCATED IN- cellular_component unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Thioredoxin fold (InterPro-IPR012335), Thioredoxin-like fold (InterPro-IPR012336), Protein of unknown function DUF953, thioredoxin-like (InterPro-IPR010357); Has 237 Blast hits to 237 proteins in 83 species- Archae - 0; Bacteria - 0; Metazoa - 174; Fungi - 29; Plants - 21; Viruses - 0; Other Eukaryotes - 13 (source- NCBI BLink). (134 aa)
       
      0.612
Bra040527
AT5G26980 (E=7e-147) SYP41, ATSYP41, ATTLG2A | SYP41 (SYNTAXIN OF PLANTS 41); SNAP receptor (318 aa)
     
      0.538
Bra039417
AT5G26980 (E=4e-149) SYP41, ATSYP41, ATTLG2A | SYP41 (SYNTAXIN OF PLANTS 41); SNAP receptor (317 aa)
     
      0.538
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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