STRINGSTRING
Bra007701 protein (Brassica rapa) - STRING interaction network
"Bra007701" - AT3G62790 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007701AT3G62790 (E=1e-047) | NADH-ubiquinone oxidoreductase-related (83 aa)    
Predicted Functional Partners:
Bra029537
AT4G04955 (E=2e-237) ATALN | ATALN (Arabidopsis allantoinase); allantoinase/ hydrolase (504 aa)
           
  0.470
Bra022676
AT5G53850 (E=1e-263) | haloacid dehalogenase-like hydrolase family protein (501 aa)
           
  0.418
Bra003029
AT5G53850 (E=2e-132) | haloacid dehalogenase-like hydrolase family protein (519 aa)
           
  0.418
Bra020885
AT4G21105 (E=1e-032) | cytochrome-c oxidase/ electron carrier (68 aa)
     
   
  0.404
Bra020934
AT4G20150 (E=1e-038) | unknown protein (104 aa)
     
   
  0.403
Bra012516
AT4G20150 (E=9e-042) | unknown protein (81 aa)
     
   
  0.403
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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