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Bra007702 protein (Brassica rapa) - STRING interaction network
"Bra007702" - AT3G62800 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007702AT3G62800 (E=3e-102) | DRB4 (DOUBLE-STRANDED-RNA-BINDING PROTEIN 4); double-stranded RNA binding / protein binding (330 aa)    
Predicted Functional Partners:
Bra002293
AT5G20320 (E=0.0) DCL4, ATDCL4 | DCL4 (DICER-LIKE 4); RNA binding / protein binding / ribonuclease III (1641 aa)
       
 
  0.963
Bra031999
AT3G03300 (E=0.0) DCL2, ATDCL2 | DCL2 (DICER-LIKE 2); ATP binding / ATP-dependent helicase/ RNA binding / double-stranded RNA binding / helicase/ nucleic acid binding / ribonuclease III (1277 aa)
       
 
  0.959
Bra033293
AT1G01040 (E=0.0) DCL1, CAF, SUS1, SIN1, ASU1, EMB76, EMB60, ATDCL1 | DCL1 (DICER-LIKE 1); ATP-dependent helicase/ double-stranded RNA binding / protein binding / ribonuclease III (1846 aa)
       
 
  0.957
Bra024475
AT2G18290 (E=1e-102) APC10 | anaphase-promoting complex, subunit 10 family / APC10 family ; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle (192 aa)
       
      0.881
Bra019456
AT3G43920 (E=0.0) DCL3, ATDCL3 | ribonuclease III family protein (1447 aa)
       
 
  0.677
Bra003999
AT1G69440 (E=0.0) AGO7, ZIP | AGO7 (ARGONAUTE7); nucleic acid binding (981 aa)
           
  0.606
Bra029957
AT3G49500 (E=0.0) RDR6, SGS2, SDE1 | RDR6 (RNA-DEPENDENT RNA POLYMERASE 6); RNA-directed RNA polymerase/ nucleic acid binding (1198 aa)
           
  0.604
Bra009695
AT5G23570 (E=2e-213) SGS3, ATSGS3 | SGS3 (SUPPRESSOR OF GENE SILENCING 3) (606 aa)
           
  0.593
Bra032254
AT1G48410 (E=0.0) AGO1 | AGO1 (ARGONAUTE 1); endoribonuclease/ miRNA binding / protein binding / siRNA binding (1111 aa)
           
  0.541
Bra023172
AT1G31280 (E=0.0) AGO2 | AGO2 (argonaute 2); nucleic acid binding (1037 aa)
           
  0.526
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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