STRINGSTRING
Bra007704 protein (Brassica rapa) - STRING interaction network
"Bra007704" - AT3G62820 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007704AT3G62820 (E=1e-065) | invertase/pectin methylesterase inhibitor family protein (189 aa)    
Predicted Functional Partners:
Bra023638
AT5G17810 (E=1e-083) WOX12 | WOX12 (WUSCHEL related homeobox 12); DNA binding / transcription factor (275 aa)
           
  0.412
Bra002108
AT5G17810 (E=6e-078) WOX12 | WOX12 (WUSCHEL related homeobox 12); DNA binding / transcription factor (273 aa)
           
  0.412
Bra000540
AT2G26440 (E=3e-254) | pectinesterase family protein (546 aa)
           
  0.410
Bra021841
AT2G21450 (E=5e-295) CHR34 | CHR34 (chromatin remodeling 34); ATP binding / DNA binding / helicase/ nucleic acid binding (764 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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