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Bra007706 protein (Brassica rapa) - STRING interaction network
"Bra007706" - AT3G62840 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007706AT3G62840 (E=2e-052) | FUNCTIONS IN- molecular_function unknown; LOCATED IN- small nucleolar ribonucleoprotein complex, nucleus; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Like-Sm ribonucleoprotein, core (InterPro-IPR001163), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro-IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro-IPR010920); BEST Arabidopsis thaliana protein match is- small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative (TAIR-AT2G47640. [...] (125 aa)    
Predicted Functional Partners:
Bra024458
AT2G18740 (E=2e-043) | small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative (86 aa)
     
  0.994
Bra010295
AT4G30220 (E=6e-046) RUXF | RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) ; Probable common Sm protein, is found in U1 and U2 snRNPs and may be part of the spliceosome (88 aa)
     
  0.994
Bra010295.1-P
AT4G30220 (E=6e-046) RUXF | RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) (88 aa)
     
  0.994
Bra038817
AT2G18770 (E=7e-116) | signal recognition particle binding (323 aa)
     
  0.991
Bra029662
AT3G07590 (E=2e-041) | small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative (118 aa)
     
  0.991
Bra000860
AT4G02840 (E=1e-050) | small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative (115 aa)
     
  0.991
Bra025830
AT1G20580 (E=7e-056) | small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative (130 aa)
     
  0.990
Bra025138
AT2G03870 (E=4e-045) | small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative (247 aa)
     
  0.989
Bra024094
AT4G30220 (E=4e-041) RUXF | RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) ; Probable common Sm protein, is found in U1 and U2 snRNPs and may be part of the spliceosome (90 aa)
     
  0.989
Bra002044
AT3G11500 (E=4e-039) | small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putative (79 aa)
     
  0.988
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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