STRINGSTRING
Bra007711 protein (Brassica rapa) - STRING interaction network
"Bra007711" - AT4G02720 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007711AT4G02720 (E=3e-057) | unknown protein (301 aa)    
Predicted Functional Partners:
Bra011462
AT4G33690 (E=7e-070) | unknown protein (254 aa)
       
      0.890
Bra001231
AT4G33690 (E=2e-021) | unknown protein (214 aa)
       
      0.890
Bra013381
AT4G19190 (E=2e-225) | zinc knuckle (CCHC-type) family protein (585 aa)
     
      0.650
Bra016955
AT2G41020 (E=1e-190) | WW domain-containing protein (799 aa)
     
      0.649
Bra041007
AT1G44910 (E=6e-210) | protein binding (1047 aa)
     
      0.640
Bra022445
AT3G19670 (E=0.0) | protein binding (1119 aa)
     
      0.640
Bra031520
AT1G60200 (E=1e-282) | splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein (881 aa)
       
      0.620
Bra040539
AT3G05560 (E=2e-046) | 60S ribosomal protein L22-2 (RPL22B) (124 aa)
     
      0.619
Bra039428
AT3G05560 (E=3e-045) | 60S ribosomal protein L22-2 (RPL22B) (124 aa)
     
      0.619
Bra033351
AT5G27770 (E=7e-037) | 60S ribosomal protein L22 (RPL22C) (125 aa)
     
      0.619
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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