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Bra007712 protein (Brassica rapa) - STRING interaction network
"Bra007712" - AT3G62910 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007712AT3G62910 (E=3e-195) APG3 | APG3 (ALBINO AND PALE GREEN); translation release factor/ translation release factor, codon specific (417 aa)    
Predicted Functional Partners:
Bra024271
AT5G64150 (E=1e-167) | methylase family protein (432 aa)
   
 
  0.971
Bra039402
AT3G13440 (E=3e-116) | methyltransferase/ nucleic acid binding (310 aa)
   
 
  0.962
Bra039401
AT3G13440 (E=5e-062) | methyltransferase/ nucleic acid binding (128 aa)
   
 
  0.962
Bra027435
AT3G13440 (E=1e-107) | methyltransferase/ nucleic acid binding (249 aa)
   
 
  0.962
Bra040978
ATCG00740 (E=1e-124) RPOA | RNA polymerase alpha subunit (475 aa)
   
 
  0.881
Bra007310
AT3G57190 (E=2e-172) | peptide chain release factor, putative (410 aa)
   
  0.840
Bra027013
AT1G62850 (E=4e-110) | translation release factor (233 aa)
     
  0.819
Bra028001
AT1G33330 (E=3e-060) | peptide chain release factor, putative (161 aa)
   
  0.807
Bra039077
AT3G27440 (E=4e-243) | uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative (788 aa)
   
   
  0.788
Bra032986
AT3G27190 (E=8e-255) | uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative (483 aa)
   
   
  0.788
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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