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Bra007723 protein (Brassica rapa) - STRING interaction network
"Bra007723" - AT3G63030 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007723AT3G63030 (E=2e-076) MBD4 | MBD4; DNA binding / DNA demethylase/ methyl-CpG binding (433 aa)    
Predicted Functional Partners:
Bra012320
AT1G22310 (E=7e-066) MBD8 | MBD8; methyl-CpG binding (340 aa)
           
  0.543
Bra002530
AT5G59800 (E=2e-097) MBD7, ATMBD7 | MBD7 (METHYL-CPG-BINDING DOMAIN 7); DNA binding / DNA demethylase/ methyl-CpG binding (307 aa)
           
  0.540
Bra012016
AT2G27470 (E=3e-045) NF-YB11 | NF-YB11 (NUCLEAR FACTOR Y, SUBUNIT B11); transcription factor (221 aa)
       
      0.534
Bra016955
AT2G41020 (E=1e-190) | WW domain-containing protein (799 aa)
       
      0.518
Bra006693
AT5G59800 (E=6e-060) MBD7, ATMBD7 | MBD7 (METHYL-CPG-BINDING DOMAIN 7); DNA binding / DNA demethylase/ methyl-CpG binding (282 aa)
           
  0.510
Bra020318
AT5G59380 (E=3e-068) MBD6, ATMBD6 | MBD6; DNA binding / DNA demethylase/ methyl-CpG binding (229 aa)
           
  0.505
Bra033814
AT3G46580 (E=2e-060) MBD05, MBD5, ATMBD5 | MBD5 (METHYL-CPG-BINDING DOMAIN PROTEIN 5); DNA binding / methyl-CpG binding (206 aa)
           
  0.504
Bra035578
AT1G60700 (E=2e-075) | forkhead-associated domain-containing protein / FHA domain-containing protein (195 aa)
       
  0.503
Bra015836
AT1G75530 (E=9e-151) | forkhead-associated domain-containing protein / FHA domain-containing protein (543 aa)
       
  0.503
Bra014820
AT3G54350 (E=1e-256) emb1967 | emb1967 (embryo defective 1967) (714 aa)
       
  0.503
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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