STRINGSTRING
Bra007726 protein (Brassica rapa) - STRING interaction network
"Bra007726" - AT3G63090 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007726AT3G63090 (E=1e-123) | ubiquitin thiolesterase (251 aa)    
Predicted Functional Partners:
Bra000939
AT4G01040 (E=2e-180) | glycosyl hydrolase family 18 protein (423 aa)
           
  0.604
Bra029465
AT4G12610 (E=4e-099) RAP74, ATRAP74 | transcription initiation factor IIF alpha subunit (TFIIF-alpha) family protein (496 aa)
           
  0.510
Bra037391
AT4G01030 (E=3e-244) | pentatricopeptide (PPR) repeat-containing protein (906 aa)
           
  0.441
Bra023152
AT1G30960 (E=6e-171) | GTP-binding protein (ERG) (433 aa)
     
   
  0.430
Bra014897
AT1G30960 (E=4e-140) | GTP-binding protein (ERG) (413 aa)
     
   
  0.430
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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