STRINGSTRING
Bra007742 protein (Brassica rapa) - STRING interaction network
"Bra007742" - AT3G63430 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007742AT3G63430 (E=2e-111) | unknown protein (525 aa)    
Predicted Functional Partners:
Bra032932
AT3G26410 (E=3e-264) | methyltransferase/ nucleic acid binding (473 aa)
           
  0.666
Bra025204
AT3G26410 (E=4e-264) | methyltransferase/ nucleic acid binding (474 aa)
           
  0.666
Bra022856
AT2G31580 (E=1e-190) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- cultured cell; CONTAINS InterPro DOMAIN/s- tRNAHis guanylyltransferase (InterPro-IPR007537); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT2G32320.1); Has 640 Blast hits to 336 proteins in 155 species- Archae - 65; Bacteria - 47; Metazoa - 212; Fungi - 176; Plants - 43; Viruses - 2; Other Eukaryotes - 95 (source- NCBI BLink). (510 aa)
           
  0.648
Bra003929
AT5G24670 (E=4e-103) | catalytic/ hydrolase/ zinc ion binding (428 aa)
           
  0.574
Bra005654
AT2G31580 (E=7e-088) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- cultured cell; CONTAINS InterPro DOMAIN/s- tRNAHis guanylyltransferase (InterPro-IPR007537); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT2G32320.1); Has 640 Blast hits to 336 proteins in 155 species- Archae - 65; Bacteria - 47; Metazoa - 212; Fungi - 176; Plants - 43; Viruses - 2; Other Eukaryotes - 95 (source- NCBI BLink). (207 aa)
           
  0.505
Bra016723
AT1G13870 (E=5e-139) DRL1 | DRL1 (DEFORMED ROOTS AND LEAVES 1); calmodulin binding / purine nucleotide binding (300 aa)
           
  0.473
Bra005655
AT2G31580 (E=2e-172) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- cultured cell; CONTAINS InterPro DOMAIN/s- tRNAHis guanylyltransferase (InterPro-IPR007537); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT2G32320.1); Has 640 Blast hits to 336 proteins in 155 species- Archae - 65; Bacteria - 47; Metazoa - 212; Fungi - 176; Plants - 43; Viruses - 2; Other Eukaryotes - 95 (source- NCBI BLink). (368 aa)
           
  0.472
Bra026877
AT1G13870 (E=5e-155) DRL1 | DRL1 (DEFORMED ROOTS AND LEAVES 1); calmodulin binding / purine nucleotide binding (302 aa)
           
  0.443
Bra008809
AT5G13680 (E=0.0) ELO2, ABO1 | ABO1 (ABA-OVERLY SENSITIVE 1); transcription elongation regulator ; Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation (1347 aa)
           
  0.412
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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