STRINGSTRING
Bra007750 protein (Brassica rapa) - STRING interaction network
"Bra007750" - AT2G26500 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007750AT2G26500 (E=7e-050) | cytochrome b6f complex subunit (petM), putative (123 aa)    
Predicted Functional Partners:
Bra031471
AT1G60950 (E=3e-057) FED A, ATFD2 | FED A; 2 iron, 2 sulfur cluster binding / electron carrier/ iron-sulfur cluster binding (148 aa)
     
        0.651
Bra027109
AT1G60950 (E=1e-055) FED A, ATFD2 | FED A; 2 iron, 2 sulfur cluster binding / electron carrier/ iron-sulfur cluster binding (148 aa)
     
        0.651
Bra038011
AT1G55670 (E=5e-055) PSAG | PSAG (PHOTOSYSTEM I SUBUNIT G) (161 aa)
     
        0.586
Bra037104
AT1G55670 (E=6e-060) PSAG | PSAG (PHOTOSYSTEM I SUBUNIT G) (161 aa)
     
        0.586
Bra030843
AT1G55670 (E=2e-065) PSAG | PSAG (PHOTOSYSTEM I SUBUNIT G) (161 aa)
     
        0.586
Bra014720
AT3G55800 (E=1e-198) SBPASE | SBPASE (sedoheptulose-bisphosphatase); phosphoric ester hydrolase/ sedoheptulose-bisphosphatase (394 aa)
     
   
  0.542
Bra007192
AT3G55800 (E=1e-202) SBPASE | SBPASE (sedoheptulose-bisphosphatase); phosphoric ester hydrolase/ sedoheptulose-bisphosphatase (393 aa)
     
   
  0.542
Bra003221
AT3G55800 (E=3e-144) SBPASE | SBPASE (sedoheptulose-bisphosphatase); phosphoric ester hydrolase/ sedoheptulose-bisphosphatase (316 aa)
     
   
  0.542
Bra014048
AT1G45474 (E=2e-115) LHCA5 | LHCA5; pigment binding (258 aa)
     
   
  0.525
Bra040469
AT1G60950 (E=5e-050) FED A, ATFD2 | FED A; 2 iron, 2 sulfur cluster binding / electron carrier/ iron-sulfur cluster binding (174 aa)
     
        0.515
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (14%) [HD]