STRINGSTRING
Bra007752 protein (Brassica rapa) - STRING interaction network
"Bra007752" - AT2G26460 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007752AT2G26460 (E=4e-144) | RED family protein (572 aa)    
Predicted Functional Partners:
Bra015971
AT1G73720 (E=2e-282) | transducin family protein / WD-40 repeat family protein (512 aa)
     
 
  0.992
Bra004926
AT2G45640 (E=4e-059) SAP18, ATSAP18 | SAP18 (SIN3 ASSOCIATED POLYPEPTIDE P18); protein binding / transcription regulator (152 aa)
       
      0.891
Bra028327
AT3G18524 (E=1e-049) MSH2, ATMSH2 | MSH2 (MUTS HOMOLOG 2); ATP binding / damaged DNA binding / mismatched DNA binding / protein binding (165 aa)
       
      0.737
Bra001709
AT3G18524 (E=0.0) MSH2, ATMSH2 | MSH2 (MUTS HOMOLOG 2); ATP binding / damaged DNA binding / mismatched DNA binding / protein binding ; Component of the post-replicative DNA mismatch repair system (MMR) (937 aa)
       
      0.737
Bra015576
AT1G07350 (E=2e-049) | transformer serine/arginine-rich ribonucleoprotein, putative (349 aa)
       
 
  0.627
Bra035567
AT5G55300 (E=3e-290) TOP1ALPHA, TOP1 | TOP1ALPHA (DNA TOPOISOMERASE I ALPHA); DNA topoisomerase type I (1225 aa)
     
      0.625
Bra002917
AT5G55310 (E=0.0) TOP1BETA, TOP1 | TOP1BETA (DNA TOPOISOMERASE 1 BETA); DNA topoisomerase type I (906 aa)
     
      0.625
Bra011637
AT4G35785 (E=2e-039) | nucleic acid binding / nucleotide binding (222 aa)
       
 
  0.616
Bra010514
AT4G35785 (E=8e-058) | nucleic acid binding / nucleotide binding (568 aa)
       
 
  0.616
Bra034616
AT4G34200 (E=8e-297) EDA9 | EDA9 (embryo sac development arrest 9); ATP binding (601 aa)
       
      0.616
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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