STRINGSTRING
Bra007753 protein (Brassica rapa) - STRING interaction network
"Bra007753" - AT2G26470 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007753AT2G26470 (E=5e-127) | unknown protein (382 aa)    
Predicted Functional Partners:
Bra004899
AT2G45330 (E=2e-090) emb1067 | emb1067 (embryo defective 1067); tRNA 2’-phosphotransferase/ transferase, transferring phosphorus-containing groups (778 aa)
              0.551
Bra025107
AT5G44740 (E=1e-202) POLH | POLH (Y-FAMILT DNA POLYMERASE H); DNA-directed DNA polymerase (691 aa)
   
        0.446
Bra025106
AT5G44750 (E=0.0) REV1, ATREV1 | REV1; DNA-directed DNA polymerase (1104 aa)
   
        0.446
Bra018821
AT1G49980 (E=1e-296) | DNA-directed DNA polymerase/ damaged DNA binding (680 aa)
   
        0.446
Bra040319
AT2G45300 (E=4e-257) | 3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase (516 aa)
              0.437
Bra028509
AT5G41850 (E=1e-098) | unknown protein (230 aa)
              0.437
Bra004226
AT1G67440 (E=7e-123) emb1688 | emb1688 (embryo defective 1688); GTP binding / GTPase (463 aa)
              0.437
Bra000384
AT2G45300 (E=4e-255) | 3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase (514 aa)
              0.437
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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