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Bra007755 protein (Brassica rapa) - STRING interaction network
"Bra007755" - AT3G53690 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007755AT3G53690 (E=3e-066) | zinc finger (C3HC4-type RING finger) family protein (128 aa)    
Predicted Functional Partners:
Bra018610
AT1G08640 (E=2e-129) | unknown protein (287 aa)
       
 
  0.760
Bra024598
AT1G23410 (E=2e-021) | ubiquitin extension protein, putative / 40S ribosomal protein S27A (RPS27aA) (210 aa)
       
    0.675
Bra016346
AT1G23410 (E=6e-029) | ubiquitin extension protein, putative / 40S ribosomal protein S27A (RPS27aA) (84 aa)
       
    0.675
Bra039068
AT3G27710 (E=3e-196) ATARI13, ARI13 | zinc finger protein-related (524 aa)
       
  0.617
Bra038660
AT5G63750 (E=1e-040) | IBR domain-containing protein (185 aa)
       
  0.617
Bra038659
AT5G63750 (E=2e-136) | IBR domain-containing protein (501 aa)
       
  0.617
Bra038658
AT5G63730 (E=4e-075) | IBR domain-containing protein (432 aa)
       
  0.617
Bra038276
AT5G08730 (E=2e-126) | IBR domain-containing protein (603 aa)
       
  0.617
Bra033024
AT3G27710 (E=2e-202) ATARI13, ARI13 | zinc finger protein-related (526 aa)
       
  0.617
Bra029204
AT5G63730 (E=4e-086) | IBR domain-containing protein (445 aa)
       
  0.617
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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