STRINGSTRING
Bra007763 protein (Brassica rapa) - STRING interaction network
"Bra007763" - AT2G26280 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007763AT2G26280 (E=4e-129) CID7 | CID7; ATP binding / damaged DNA binding / protein binding (302 aa)    
Predicted Functional Partners:
Bra001744
AT1G49760 (E=5e-018) PAB8, PABP8 | PAB8 (POLY(A) BINDING PROTEIN 8); RNA binding / translation initiation factor (124 aa)
       
 
  0.621
Bra023325
AT5G11440 (E=7e-041) CID5, IPD1 | CID5; protein binding (162 aa)
           
  0.431
Bra009849
AT5G25540 (E=1e-032) CID6 | CID6 (CTC-Interacting Domain 6); protein binding (173 aa)
           
  0.431
Bra008962
AT5G11440 (E=3e-039) CID5, IPD1 | CID5; protein binding (186 aa)
           
  0.431
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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