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Bra007771 protein (Brassica rapa) - STRING interaction network
"Bra007771" - AT2G26060 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurence
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[Homology]
Score
Bra007771AT2G26060 (E=3e-173) emb1345 | emb1345 (embryo defective 1345); nucleotide binding ; Essential component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for the maturation of extramitochondrial Fe/S proteins (346 aa)    
Predicted Functional Partners:
Bra036857
AT3G50845 (E=9e-069) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF59 (InterPro-IPR002744); BEST Arabidopsis thaliana protein match is- vacuolar sorting signal binding (TAIR-AT1G68310.2); Has 415 Blast hits to 414 proteins in 153 species- Archae - 0; Bacteria - 0; Metazoa - 216; Fungi - 86; Plants - 41; Viruses - 0; Other Eukaryotes - 72 (source- NCBI BLink). (154 aa)
       
  0.967
Bra034068
AT3G09380 (E=2e-041) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- sperm cell, flower; EXPRESSED DURING- petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF59 (InterPro-IPR002744); BEST Arabidopsis thaliana protein match is- vacuolar sorting signal binding (TAIR-AT1G68310.2); Has 408 Blast hits to 408 proteins in 151 species- Archae - 0; Bacteria - 0; Metazoa - 214; Fungi - 85; Plants - 40; Viruses - 0; Other Eukaryotes - 69 (source- NCBI BLink). (184 aa)
       
  0.967
Bra033949
AT1G68310 (E=9e-052) | vacuolar sorting signal binding (170 aa)
       
  0.967
Bra029764
AT3G09380 (E=1e-041) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- sperm cell, flower; EXPRESSED DURING- petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF59 (InterPro-IPR002744); BEST Arabidopsis thaliana protein match is- vacuolar sorting signal binding (TAIR-AT1G68310.2); Has 408 Blast hits to 408 proteins in 151 species- Archae - 0; Bacteria - 0; Metazoa - 214; Fungi - 85; Plants - 40; Viruses - 0; Other Eukaryotes - 69 (source- NCBI BLink). (135 aa)
       
  0.967
Bra004296
AT1G68310 (E=2e-063) | vacuolar sorting signal binding (165 aa)
       
  0.967
Bra004042
AT1G68310 (E=4e-057) | vacuolar sorting signal binding (169 aa)
       
  0.967
Bra025699
AT5G48120 (E=2e-016) | binding (202 aa)
       
  0.964
Bra020719
AT5G48120 (E=0.0) | binding (1134 aa)
       
  0.964
Bra040632
AT1G66740 (E=4e-090) AtSP7, SP7, SGA2, ASF1A | SGA2 (196 aa)
       
      0.891
Bra004186
AT1G66740 (E=1e-082) AtSP7, SP7, SGA2, ASF1A | SGA2 (199 aa)
       
      0.891
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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