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Bra007773 protein (Brassica rapa) - STRING interaction network
"Bra007773" - AT2G22050 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007773AT2G22050 (E=6e-057) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast; EXPRESSED IN- sperm cell; CONTAINS InterPro DOMAIN/s- Cyclin-like F-box (InterPro-IPR001810), Kelch repeat type 1 (InterPro-IPR006652), Galactose oxidase/kelch, beta-propeller (InterPro-IPR011043), Kelch related (InterPro-IPR013089), Kelch repeat type 2 (InterPro-IPR011498), Kelch-type beta propeller (InterPro-IPR015915); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT2G41360.1); Has 669 Blast hits to 647 proteins in 61 species- Archae [...] (371 aa)    
Predicted Functional Partners:
Bra021653
AT2G30600 (E=0.0) | BTB/POZ domain-containing protein (799 aa)
     
 
  0.432
Bra015086
AT3G24800 (E=2e-094) PRT1 | PRT1 (PROTEOLYSIS 1); ubiquitin-protein ligase (378 aa)
         
  0.401
Bra013241
AT3G24800 (E=4e-105) PRT1 | PRT1 (PROTEOLYSIS 1); ubiquitin-protein ligase (390 aa)
         
  0.401
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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