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Bra007775 protein (Brassica rapa) - STRING interaction network
"Bra007775" - AT2G25940 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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[Homology]
Score
Bra007775AT2G25940 (E=1e-237) ALPHA-VPE, ALPHAVPE | ALPHA-VPE (alpha-vacuolar processing enzyme); cysteine-type endopeptidase (489 aa)    
Predicted Functional Partners:
Bra002215
AT5G19130 (E=0.0) | GPI transamidase component family protein / Gaa1-like family protein (695 aa)
       
  0.944
Bra029625
AT3G07140 (E=4e-291) | GPI transamidase component Gpi16 subunit family protein (637 aa)
     
  0.943
Bra029630
AT3G07180 (E=3e-268) | GPI transamidase component PIG-S-related (603 aa)
       
  0.940
Bra026998
AT1G63110 (E=4e-212) | cell division cycle protein-related (477 aa)
     
  0.854
Bra032981
AT3G27090 (E=2e-090) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Development and cell death domain (InterPro-IPR013989), Kelch related (InterPro-IPR013089); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G42050.1); Has 642 Blast hits to 564 proteins in 35 species- Archae - 0; Bacteria - 2; Metazoa - 12; Fungi - 0; Plants - 155; Viruses - 0; Other Eukaryotes - 473 (source- NCBI BLink). (262 aa)
           
  0.503
Bra024775
AT2G03440 (E=4e-055) | nodulin-related (177 aa)
           
  0.499
Bra028523
AT5G42050 (E=6e-091) | FUNCTIONS IN- molecular_function unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Development and cell death domain (InterPro-IPR013989), Kelch related (InterPro-IPR013089); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G27090.1); Has 5084 Blast hits to 2870 proteins in 85 species- Archae - 0; Bacteria - 24; Metazoa - 270; Fungi - 58; Plants - 157; Viruses - 8; Other Eukaryotes - 4567 (source- NCBI BLink). (333 aa)
           
  0.491
Bra025450
AT5G42050 (E=7e-103) | FUNCTIONS IN- molecular_function unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Development and cell death domain (InterPro-IPR013989), Kelch related (InterPro-IPR013089); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G27090.1); Has 5084 Blast hits to 2870 proteins in 85 species- Archae - 0; Bacteria - 24; Metazoa - 270; Fungi - 58; Plants - 157; Viruses - 8; Other Eukaryotes - 4567 (source- NCBI BLink). (342 aa)
           
  0.491
Bra040749
AT1G47128 (E=1e-226) RD21, RD21A | RD21 (responsive to dehydration 21); cysteine-type endopeptidase/ cysteine-type peptidase (457 aa)
     
   
  0.477
Bra038208
AT3G19390 (E=4e-179) | cysteine proteinase, putative / thiol protease, putative (441 aa)
     
   
  0.477
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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