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Bra007776 protein (Brassica rapa) - STRING interaction network
"Bra007776" - AT2G25970 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007776AT2G25970 (E=6e-092) | KH domain-containing protein (698 aa)    
Predicted Functional Partners:
Bra037150
AT5G66750 (E=0.0) DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1 | CHR1 (CHROMATIN REMODELING 1); ATPase/ helicase (1199 aa)
     
 
  0.919
Bra035318
AT2G43370 (E=1e-011) | U1 small nuclear ribonucleoprotein 70 kDa, putative (127 aa)
     
 
  0.781
Bra012098
AT3G50670 (E=3e-054) U1-70K, U1SNRNP | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K); RNA binding / nucleic acid binding / nucleotide binding (178 aa)
     
 
  0.781
Bra007429
AT2G43370 (E=3e-017) | U1 small nuclear ribonucleoprotein 70 kDa, putative (79 aa)
     
 
  0.781
Bra000304
AT2G43370 (E=2e-118) | U1 small nuclear ribonucleoprotein 70 kDa, putative (321 aa)
     
 
  0.781
Bra006502
AT5G19350 (E=3e-180) | RNA-binding protein 45 (RBP45), putative (430 aa)
     
 
  0.756
Bra002230
AT5G19350 (E=3e-169) | RNA-binding protein 45 (RBP45), putative (419 aa)
     
 
  0.756
Bra005798
AT5G04280 (E=6e-101) | glycine-rich RNA-binding protein (306 aa)
     
 
  0.754
Bra014216
AT1G49600 (E=3e-107) ATRBP47A | ATRBP47A (Arabidopsis thaliana RNA-binding protein 47a); RNA binding (572 aa)
       
 
  0.753
Bra041017
AT1G53650 (E=3e-118) CID8 | CID8 (CTC-INTERACTING DOMAIN 8); RNA binding / protein binding (291 aa)
       
 
  0.752
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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