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Bra007787 protein (Brassica rapa) - STRING interaction network
"Bra007787" - AT2G25580 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007787AT2G25580 (E=8e-191) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 21 plant structures; EXPRESSED DURING- 12 growth stages; CONTAINS InterPro DOMAIN/s- Pentatricopeptide repeat (InterPro-IPR002885); BEST Arabidopsis thaliana protein match is- pentatricopeptide (PPR) repeat-containing protein (TAIR-AT4G32450.1); Has 7881 Blast hits to 3723 proteins in 97 species- Archae - 0; Bacteria - 6; Metazoa - 6; Fungi - 16; Plants - 7829; Viruses - 0; Other Eukaryotes - 24 (source- NCBI BLink). (591 aa)    
Predicted Functional Partners:
Bra017662
AT2G16370 (E=2e-245) THY-1 | THY-1 (THYMIDYLATE SYNTHASE 1); dihydrofolate reductase/ thymidylate synthase ; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism (504 aa)
     
 
    0.923
Bra013079
AT2G16370 (E=4e-268) THY-1 | THY-1 (THYMIDYLATE SYNTHASE 1); dihydrofolate reductase/ thymidylate synthase ; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism (618 aa)
     
 
    0.923
Bra011543
AT2G16370 (E=2e-257) THY-1 | THY-1 (THYMIDYLATE SYNTHASE 1); dihydrofolate reductase/ thymidylate synthase ; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism (499 aa)
     
 
    0.923
Bra000581
AT2G21550 (E=6e-203) | bifunctional dihydrofolate reductase-thymidylate synthase, putative / DHFR-TS, putative (452 aa)
     
 
    0.923
Bra032952
AT3G26780 (E=6e-173) | catalytic (391 aa)
           
  0.541
Bra022259
AT3G17910 (E=3e-163) SURF1 | SURF1 (SURFEIT 1) (349 aa)
     
   
  0.480
Bra021283
AT3G17910 (E=3e-153) SURF1 | SURF1 (SURFEIT 1) (340 aa)
     
   
  0.480
Bra039230
AT2G24120 (E=0.0) PDE319, SCA3 | SCA3 (SCABRA 3); DNA binding / DNA-directed RNA polymerase ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (979 aa)
     
 
  0.465
Bra032120
AT2G24120 (E=0.0) PDE319, SCA3 | SCA3 (SCABRA 3); DNA binding / DNA-directed RNA polymerase (940 aa)
     
 
  0.465
Bra027253
AT5G15700 (E=3e-044) | DNA-directed RNA polymerase (RPOT2) (128 aa)
     
 
  0.465
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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