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Bra007795 protein (Brassica rapa) - STRING interaction network
"Bra007795" - AT2G25520 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007795AT2G25520 (E=4e-170) | phosphate translocator-related (349 aa)    
Predicted Functional Partners:
Bra038468
AT4G16470 (E=5e-158) | INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 14 plant structures; EXPRESSED DURING- 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s- Pentatricopeptide repeat (InterPro-IPR002885); BEST Arabidopsis thaliana protein match is- CRR22 (CHLORORESPIRATORY REDUCTION22); endonuclease (TAIR-AT1G11290.1); Has 12729 Blast hits to 4676 proteins in 132 species- Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 25; Plants - 12474; Vi [...] (474 aa)
           
  0.606
Bra007578
AT3G61170 (E=3e-225) | pentatricopeptide (PPR) repeat-containing protein (803 aa)
           
  0.582
Bra011348
AT4G32450 (E=5e-189) | pentatricopeptide (PPR) repeat-containing protein (791 aa)
           
  0.552
Bra012900
AT3G50420 (E=0.0) | pentatricopeptide (PPR) repeat-containing protein (713 aa)
           
  0.549
Bra002367
AT5G21222 (E=0.0) | protein kinase family protein (838 aa)
           
  0.499
Bra034448
AT1G34020 (E=2e-162) | transporter-related (335 aa)
           
  0.495
Bra028027
AT1G34020 (E=2e-165) | transporter-related (335 aa)
           
  0.495
Bra011863
AT4G39390 (E=5e-156) ATNST-KT1, NST-K1 | NST-K1 (NUCLEOTIDE SUGAR TRANSPORTER-KT 1); nucleotide-sugar transmembrane transporter (335 aa)
           
  0.495
Bra010685
AT4G39390 (E=1e-156) ATNST-KT1, NST-K1 | NST-K1 (NUCLEOTIDE SUGAR TRANSPORTER-KT 1); nucleotide-sugar transmembrane transporter (335 aa)
           
  0.495
Bra000693
AT4G09810 (E=3e-155) | transporter-related (334 aa)
           
  0.495
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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