STRINGSTRING
Bra007803.1-P protein (Brassica rapa) - STRING interaction network
"Bra007803.1-P" - AT2G25310 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007803.1-PAT2G25310 (E=3e-077) | carbohydrate binding (208 aa)    
Predicted Functional Partners:
Bra035357
AT1G65270 (E=3e-112) | unknown protein (296 aa)
     
 
  0.780
Bra022485
AT1G65270 (E=6e-117) | unknown protein (267 aa)
     
 
  0.780
Bra036137
AT3G04320 (E=1e-053) | endopeptidase inhibitor (336 aa)
       
 
  0.777
Bra010030
AT5G49540 (E=2e-036) | unknown protein (116 aa)
       
 
  0.777
Bra028567
AT5G10780 (E=1e-084) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 14 growth stages; CONTAINS InterPro DOMAIN/s- Uncharacterised conserved protein UCP017207, transmembrane protein 85 (InterPro-IPR016687), Protein of unknown function DUF1077 (InterPro-IPR009445); Has 281 Blast hits to 281 proteins in 136 species- Archae - 0; Bacteria - 0; Metazoa - 114; Fungi - 83; Plants - 23; Viruses - 0; Other Eukaryotes - 61 (source- NCBI BLink). (180 aa)
     
 
  0.771
Bra006078
AT5G10780 (E=8e-086) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 14 growth stages; CONTAINS InterPro DOMAIN/s- Uncharacterised conserved protein UCP017207, transmembrane protein 85 (InterPro-IPR016687), Protein of unknown function DUF1077 (InterPro-IPR009445); Has 281 Blast hits to 281 proteins in 136 species- Archae - 0; Bacteria - 0; Metazoa - 114; Fungi - 83; Plants - 23; Viruses - 0; Other Eukaryotes - 61 (source- NCBI BLink). (180 aa)
     
 
  0.771
Bra035597
AT5G55940 (E=2e-070) emb2731 | emb2731 (embryo defective 2731) (135 aa)
       
 
  0.751
Bra028953
AT5G55940 (E=3e-100) emb2731 | emb2731 (embryo defective 2731) (206 aa)
       
 
  0.751
Bra002866
AT5G55940 (E=2e-033) emb2731 | emb2731 (embryo defective 2731) (157 aa)
       
 
  0.751
Bra040408
AT3G04830 (E=1e-151) | binding (303 aa)
     
 
  0.638
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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