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Bra007804 protein (Brassica rapa) - STRING interaction network
"Bra007804" - AT2G25300 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007804AT2G25300 (E=4e-165) | transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (346 aa)    
Predicted Functional Partners:
Bra030055
AT1G27600 (E=1e-167) | glycosyl transferase family 43 protein (385 aa)
         
  0.705
Bra012145
AT5G67230 (E=5e-193) | glycosyl transferase family 43 protein (472 aa)
         
  0.705
Bra011745
AT4G36890 (E=5e-184) IRX14 | IRX14 (irregular xylem 14); transferase, transferring glycosyl groups / xylosyltransferase (518 aa)
         
  0.705
Bra010929
AT1G27600 (E=4e-167) | glycosyl transferase family 43 protein (388 aa)
         
  0.705
Bra005218
AT2G37090 (E=2e-177) IRX9 | IRX9 (IRREGULAR XYLEM 9); transferase, transferring glycosyl groups / xylosyltransferase (347 aa)
         
  0.705
Bra018103
AT5G62620 (E=1e-298) | galactosyltransferase family protein (662 aa)
         
  0.607
Bra015892
AT1G74800 (E=0.0) | galactosyltransferase family protein (662 aa)
         
  0.576
Bra040271
AT3G06440 (E=3e-179) | galactosyltransferase family protein (463 aa)
         
  0.575
Bra013498
AT4G21060 (E=2e-311) | galactosyltransferase family protein (585 aa)
         
  0.543
Bra018639
AT1G08280 (E=7e-142) | glycosyl transferase family 29 protein / sialyltransferase family protein (305 aa)
           
  0.541
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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