STRINGSTRING
Bra007806 protein (Brassica rapa) - STRING interaction network
"Bra007806" - AT2G25280 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007806AT2G25280 (E=1e-146) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Mediator of ErbB2-driven cell motility (Memo), related (InterPro-IPR002737); Has 742 Blast hits to 742 proteins in 323 species- Archae - 138; Bacteria - 240; Metazoa - 132; Fungi - 82; Plants - 26; Viruses - 0; Other Eukaryotes - 124 (source- NCBI BLink). (291 aa)    
Predicted Functional Partners:
Bra000088
AT2G38710 (E=3e-111) | AMMECR1 family (214 aa)
 
        0.684
Bra017107
AT2G38710 (E=4e-109) | AMMECR1 family (212 aa)
 
        0.675
Bra005986
AT5G08340 (E=5e-169) | riboflavin biosynthesis protein-related (367 aa)
     
      0.627
Bra036630
AT5G27450 (E=3e-173) MVK, MK | MK (MEVALONATE KINASE); mevalonate kinase (382 aa)
       
  0.617
Bra020589
AT5G27450 (E=4e-170) MVK, MK | MK (MEVALONATE KINASE); mevalonate kinase (381 aa)
       
  0.617
Bra040978
ATCG00740 (E=1e-124) RPOA | RNA polymerase alpha subunit (475 aa)
              0.557
Bra024701
AT1G26640 (E=8e-170) | aspartate/glutamate/uridylate kinase family protein (330 aa)
       
  0.548
Bra027370
AT3G14150 (E=2e-166) | (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative (1001 aa)
   
        0.544
Bra036669
AT3G24830 (E=2e-111) | 60S ribosomal protein L13A (RPL13aB) (206 aa)
   
        0.465
Bra036161
AT5G48760 (E=5e-112) | 60S ribosomal protein L13A (RPL13aD) (206 aa)
   
        0.465
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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