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Bra007814 protein (Brassica rapa) - STRING interaction network
"Bra007814" - AT2G25170 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007814AT2G25170 (E=0.0) PKL, GYM, CHD3, CHR6, SSL2 | PKL (PICKLE); ATPase/ DNA binding / DNA helicase (1365 aa)    
Predicted Functional Partners:
Bra039916
AT2G18090 (E=6e-020) | PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein (144 aa)
     
  0.944
Bra030594
AT1G04880 (E=6e-131) | high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein (409 aa)
     
  0.890
Bra008976
AT5G11260 (E=6e-048) HY5, TED 5 | HY5 (ELONGATED HYPOCOTYL 5); DNA binding / double-stranded DNA binding / transcription factor (164 aa)
       
 
  0.889
Bra039210
AT2G23740 (E=5e-041) | nucleic acid binding / transcription factor/ zinc ion binding (306 aa)
     
  0.854
Bra034062
AT5G37150 (E=2e-096) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; BEST Arabidopsis thaliana protein match is- tRNA-splicing endonuclease positive effector-related (TAIR-AT5G52090.1); Has 4236 Blast hits to 3442 proteins in 554 species- Archae - 133; Bacteria - 787; Metazoa - 1285; Fungi - 856; Plants - 359; Viruses - 41; Other Eukaryotes - 775 (source- NCBI BLink). (1038 aa)
     
 
  0.816
HD1
AT4G38130 (E=8e-284) HD1, HDA19, ATHD1, HDA1, RPD3A | HD1 (HISTONE DEACETYLASE 1); basal transcription repressor/ histone deacetylase/ protein binding (502 aa)
     
  0.810
Bra032450
AT1G05830 (E=1e-181) ATX2, SDG30 | ATX2 (ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2); DNA binding / histone methyltransferase(H3-K4 specific) ; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N- glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3’ to the AP site by a beta-elimination. Primarily recogn [...] (1088 aa)
     
  0.780
Bra022223
AT3G17590 (E=1e-117) BSH, CHE1 | BSH (BUSHY GROWTH); chromatin binding / protein binding (236 aa)
       
 
  0.774
Bra033729
AT5G44200 (E=2e-101) CBP20, ATCBP20 | CBP20 (CAP-BINDING PROTEIN 20); RNA binding / RNA cap binding (264 aa)
     
      0.745
Bra029538
AT4G31680 (E=5e-017) | transcriptional factor B3 family protein (544 aa)
     
 
  0.713
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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