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Bra007818 protein (Brassica rapa) - STRING interaction network
"Bra007818" - AT2G25110 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007818AT2G25110 (E=3e-106) SDF2 | SDF2 (STROMAL CELL-DERIVED FACTOR 2-LIKE PROTEIN PRECURSOR) (219 aa)    
Predicted Functional Partners:
Bra014400
AT3G62600 (E=3e-161) ATERDJ3B | ATERDJ3B; heat shock protein binding / unfolded protein binding (668 aa)
     
 
  0.858
Bra007687
AT3G62600 (E=2e-172) ATERDJ3B | ATERDJ3B; heat shock protein binding / unfolded protein binding (346 aa)
     
 
  0.858
Bra033942
AT1G68370 (E=3e-201) ARG1 | ARG1 (ALTERED RESPONSE TO GRAVITY 1); cytoskeletal protein binding (410 aa)
     
 
  0.812
Bra027824
AT1G59980 (E=2e-193) ATDJC39, ARL2 | ARL2 (ARG1-LIKE 2); heat shock protein binding / unfolded protein binding (414 aa)
     
 
  0.812
Bra024636
AT1G24120 (E=2e-183) ARL1 | ARL1 (ARG1-LIKE 1); heat shock protein binding / unfolded protein binding (432 aa)
     
 
  0.812
Bra016320
AT1G24120 (E=4e-078) ARL1 | ARL1 (ARG1-LIKE 1); heat shock protein binding / unfolded protein binding (383 aa)
     
 
  0.812
Bra004301
AT1G68370 (E=8e-189) ARG1 | ARG1 (ALTERED RESPONSE TO GRAVITY 1); cytoskeletal protein binding (403 aa)
     
 
  0.812
Bra003501
AT3G62600 (E=8e-151) ATERDJ3B | ATERDJ3B; heat shock protein binding / unfolded protein binding (371 aa)
     
 
  0.812
Bra038496
AT4G16660 (E=0.0) | heat shock protein 70, putative / HSP70, putative (846 aa)
     
 
  0.621
Bra012696
AT4G16660 (E=0.0) | heat shock protein 70, putative / HSP70, putative (869 aa)
     
 
  0.621
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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