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Bra007822 protein (Brassica rapa) - STRING interaction network
"Bra007822" - AT2G25050 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007822AT2G25050 (E=1e-239) | formin homology 2 domain-containing protein / FH2 domain-containing protein (1118 aa)    
Predicted Functional Partners:
Bra029067
AT5G53460 (E=0.0) GLT1 | GLT1; glutamate synthase (NADH) (2199 aa)
     
        0.746
Bra016948
AT2G41220 (E=0.0) GLU2 | GLU2 (GLUTAMATE SYNTHASE 2); glutamate synthase (ferredoxin) (1626 aa)
     
        0.722
Bra009483
AT5G04140 (E=0.0) GLU1, GLS1, GLUS, FD-GOGAT | GLU1 (GLUTAMATE SYNTHASE 1); glutamate synthase (ferredoxin) (1620 aa)
     
        0.722
Bra000220
AT2G41220 (E=0.0) GLU2 | GLU2 (GLUTAMATE SYNTHASE 2); glutamate synthase (ferredoxin) (1586 aa)
     
        0.722
Bra000328
AT2G43800 (E=5e-253) | formin homology 2 domain-containing protein / FH2 domain-containing protein (895 aa)
         
  0.569
Bra002969
AT5G54650 (E=8e-315) Fh5, ATFH5 | Fh5 (FORMIN HOMOLOGY5); actin binding (877 aa)
         
  0.481
Bra037277
AT2G17290 (E=5e-296) CPK6, ATCDPK3 | CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6); ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase (551 aa)
     
   
  0.451
Bra033557
AT2G17290 (E=3e-250) CPK6, ATCDPK3 | CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6); ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase (895 aa)
     
   
  0.451
Bra029859
AT3G10660 (E=4e-281) CPK2, ATCPK2 | CPK2 (CALMODULIN-DOMAIN PROTEIN KINASE CDPK ISOFORM 2); calmodulin-dependent protein kinase/ kinase/ protein serine/threonine kinase (950 aa)
     
   
  0.451
Bra020035
AT5G19360 (E=2e-281) CPK34 | CPK34; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase (517 aa)
     
   
  0.451
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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