STRINGSTRING
ARF1 protein (Brassica rapa) - STRING interaction network
"ARF1" - AT2G24765 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARF1AT2G24765 (E=2e-094) ARF3, ARL1, ATARL1 | ARF3 (ADP-RIBOSYLATION FACTOR 3); protein binding ; GTP-binding protein involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus (182 aa)    
Predicted Functional Partners:
Bra031850
AT5G65670 (E=5e-082) IAA9 | IAA9 (INDOLE-3-ACETIC ACID INDUCIBLE 9); transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (292 aa)
       
      0.978
Bra036791
AT3G51560 (E=0.0) | ATP binding / protein binding / transmembrane receptor (1994 aa)
   
  0.972
Bra039532
AT3G47110 (E=2e-165) | leucine-rich repeat transmembrane protein kinase, putative (959 aa)
     
  0.972
Bra039531
AT3G47090 (E=6e-148) | leucine-rich repeat transmembrane protein kinase, putative (967 aa)
     
  0.972
Bra039525
AT5G44700 (E=0.0) EDA23, GSO2 | GSO2 (GASSHO 2); ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (1243 aa)
     
  0.972
Bra039232
AT2G24130 (E=0.0) | leucine-rich repeat transmembrane protein kinase, putative (992 aa)
     
  0.972
Bra039063
AT3G28040 (E=0.0) | leucine-rich repeat transmembrane protein kinase, putative (1014 aa)
     
  0.972
Bra038911
AT3G51740 (E=2e-230) IMK2 | IMK2 (INFLORESCENCE MERISTEM RECEPTOR-LIKE KINASE 2); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (805 aa)
     
  0.972
Bra038228
AT3G19700 (E=2e-289) IKU2 | IKU2 (HAIKU2); ATP binding / protein binding / protein kinase/ protein serine/threonine kinase (970 aa)
     
  0.972
Bra037825
AT5G65710 (E=0.0) HSL2 | HSL2 (HAESA-Like 2); ATP binding / kinase/ protein serine/threonine kinase (989 aa)
     
  0.972
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (15%) [HD]