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Bra007835 protein (Brassica rapa) - STRING interaction network
"Bra007835" - AT2G24700 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007835AT2G24700 (E=3e-082) | transcriptional factor B3 family protein (717 aa)    
Predicted Functional Partners:
Bra022559
AT5G51680 (E=7e-030) | hydroxyproline-rich glycoprotein family protein (321 aa)
           
  0.540
Bra022558
AT5G51670 (E=5e-120) | unknown protein (468 aa)
           
  0.540
Bra021344
AT2G20410 (E=2e-043) | activating signal cointegrator-related (92 aa)
           
  0.540
Bra005719
AT5G02370 (E=3e-207) | kinesin motor protein-related (599 aa)
           
  0.518
Bra021343
AT2G20410 (E=8e-034) | activating signal cointegrator-related (226 aa)
           
  0.510
Bra009596
AT5G02370 (E=1e-251) | kinesin motor protein-related (586 aa)
           
  0.493
Bra033999
AT1G67430 (E=5e-086) | 60S ribosomal protein L17 (RPL17B) (175 aa)
           
  0.479
Bra021010
AT4G18425 (E=2e-105) | unknown protein (214 aa)
           
  0.478
Bra013307
AT4G18425 (E=3e-106) | unknown protein (224 aa)
           
  0.478
Bra027661
AT2G20420 (E=3e-228) | succinyl-CoA ligase (GDP-forming) beta-chain, mitochondrial, putative / succinyl-CoA synthetase, beta chain, putative / SCS-beta, putative (421 aa)
           
  0.476
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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