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Bra007844 protein (Brassica rapa) - STRING interaction network
"Bra007844" - AT2G24500 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007844AT2G24500 (E=2e-155) FZF | FZF; transcription factor (400 aa)    
Predicted Functional Partners:
Bra023878
AT1G23280 (E=4e-015) | MAK16 protein-related (96 aa)
     
        0.843
Bra023781
AT1G23280 (E=2e-063) | MAK16 protein-related (286 aa)
     
        0.843
Bra007931
AT1G23280 (E=5e-083) | MAK16 protein-related (302 aa)
     
        0.843
Bra003949
AT1G23280 (E=6e-097) | MAK16 protein-related (305 aa)
     
        0.843
Bra001895
AT1G23280 (E=2e-092) | MAK16 protein-related (297 aa)
     
        0.843
Bra040357
AT3G07050 (E=1e-165) | GTP-binding family protein (615 aa)
     
 
  0.791
Bra029617
AT3G07050 (E=4e-230) | GTP-binding family protein (594 aa)
     
 
  0.791
Bra001232
AT3G07050 (E=2e-216) | GTP-binding family protein (584 aa)
     
 
  0.791
Bra000863
AT4G02790 (E=5e-172) | GTP-binding family protein (370 aa)
     
 
  0.791
Bra040033
AT2G03820 (E=7e-241) | nonsense-mediated mRNA decay NMD3 family protein (509 aa)
     
 
  0.782
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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