STRINGSTRING
Bra007849 protein (Brassica rapa) - STRING interaction network
"Bra007849" - AT2G24450 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007849AT2G24450 (E=4e-090) FLA3 | FLA3 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 3 PRECURSOR) (280 aa)    
Predicted Functional Partners:
Bra028848
AT5G03170 (E=4e-106) FLA11 | FLA11 (243 aa)
           
  0.447
Bra005740
AT5G03170 (E=1e-092) FLA11 | FLA11 (243 aa)
           
  0.447
Bra026159
AT1G15190 (E=1e-069) | FUNCTIONS IN- molecular_function unknown; LOCATED IN- endomembrane system; EXPRESSED IN- flower; EXPRESSED DURING- petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s- FAS1 domain (InterPro-IPR000782); Has 49 Blast hits to 39 proteins in 5 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (243 aa)
           
  0.410
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (10%) [HD]