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Bra007852.1-P protein (Brassica rapa) - STRING interaction network
"Bra007852.1-P" - AT1G59840 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007852.1-PAT1G59840 (E=2e-105) CCB4 | CCB4 (COFACTOR ASSEMBLY OF COMPLEX C) (299 aa)    
Predicted Functional Partners:
Bra029139
AT5G52110 (E=6e-090) HCF208, CCB2 | HCF208 (HIGH CHLOROPHYLL FLUORESCENCE 208) (224 aa)
   
     
  0.688
Bra039488
AT5G36120 (E=2e-067) CCB3 | CCB3 (COFACTOR ASSEMBLY, COMPLEX C (B6F),) (180 aa)
   
   
  0.620
Bra027694
AT1G64355 (E=6e-078) | unknown protein (196 aa)
   
        0.534
Bra032943
AT3G26710 (E=1e-124) CCB1 | CCB1 (COFACTOR ASSEMBLY OF COMPLEX C) (264 aa)
     
   
  0.531
Bra038081
AT4G15510 (E=4e-105) | photosystem II reaction center PsbP family protein (267 aa)
   
        0.531
Bra039542
AT4G15510 (E=2e-100) | photosystem II reaction center PsbP family protein (269 aa)
   
        0.528
Bra025224
AT3G26710 (E=4e-119) CCB1 | CCB1 (COFACTOR ASSEMBLY OF COMPLEX C) (265 aa)
     
   
  0.526
Bra011635
AT4G35760 (E=4e-144) | LOCATED IN- chloroplast; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Vitamin K epoxide reductase (InterPro-IPR012932), Thioredoxin-like fold (InterPro-IPR012336); Has 447 Blast hits to 447 proteins in 86 species- Archae - 0; Bacteria - 179; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 237 (source- NCBI BLink). (358 aa)
   
          0.509
Bra005037
AT2G39470 (E=3e-116) PPL2 | PPL2 (PsbP-like protein 2); calcium ion binding (237 aa)
   
        0.508
Bra009067
AT5G09995 (E=2e-097) | unknown protein (247 aa)
   
          0.503
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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