STRINGSTRING
Bra003991 protein (Brassica rapa) - STRING interaction network
"Bra003991" - AT1G69620 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003991AT1G69620 (E=2e-048) RPL34 | RPL34 (RIBOSOMAL PROTEIN L34); structural constituent of ribosome (120 aa)    
Predicted Functional Partners:
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
   
  0.999
Bra025017
AT5G46420 (E=0.0) | 16S rRNA processing protein RimM family (1149 aa)
   
  0.999
Bra012616
AT4G18100 (E=1e-071) | 60S ribosomal protein L32 (RPL32A) (133 aa)
   
  0.999
Bra017545
AT4G18100 (E=4e-070) | 60S ribosomal protein L32 (RPL32A) (133 aa)
   
  0.999
Bra013284.1-P
AT4G18100 (E=1e-071) | 60S ribosomal protein L32 (RPL32A) (133 aa)
   
  0.999
Bra012616.1-P
AT4G18100 (E=1e-071) | 60S ribosomal protein L32 (RPL32A) (133 aa)
   
  0.999
Bra001719
AT1G36240 (E=2e-059) | 60S ribosomal protein L30 (RPL30A) (112 aa)
     
  0.999
Bra022351.1-P
AT1G36240 (E=2e-059) | 60S ribosomal protein L30 (RPL30A) (112 aa)
     
  0.999
Bra003662
AT1G77940 (E=8e-060) | 60S ribosomal protein L30 (RPL30B) (112 aa)
     
  0.999
Bra001719.1-P
AT1G36240 (E=2e-059) | 60S ribosomal protein L30 (RPL30A) (112 aa)
     
  0.999
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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