STRINGSTRING
Bra007872 protein (Brassica rapa) - STRING interaction network
"Bra007872" - AT1G69640 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007872AT1G69640 (E=2e-134) SBH1 | SBH1 (SPHINGOID BASE HYDROXYLASE 1); catalytic/ sphingosine hydroxylase (259 aa)    
Predicted Functional Partners:
Bra017143
AT2G38010 (E=0.0) | ceramidase family protein (750 aa)
         
  0.945
Bra005143
AT2G38010 (E=0.0) | ceramidase family protein (743 aa)
         
  0.945
Bra026898
AT1G13580 (E=1e-175) LAG13 | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) (308 aa)
       
  0.943
Bra026522
AT1G13580 (E=3e-143) LAG13 | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) (304 aa)
       
  0.943
Bra030680
AT1G07380 (E=0.0) | ceramidase family protein (769 aa)
         
  0.942
Bra020781
AT3G06060 (E=1e-144) | short-chain dehydrogenase/reductase (SDR) family protein (323 aa)
       
  0.942
Bra019380
AT4G22330 (E=1e-139) ATCES1 | ATCES1; catalytic/ hydrolase, acting on carbon-nitrogen (but not peptide) bonds, in linear amides (255 aa)
       
  0.934
Bra013611
AT4G22330 (E=2e-141) ATCES1 | ATCES1; catalytic/ hydrolase, acting on carbon-nitrogen (but not peptide) bonds, in linear amides (255 aa)
       
  0.934
Bra001740
AT3G19260 (E=7e-138) LAG1 HOMOLOG 2, LOH2 | LOH2 (LAG ONE HOMOLOGUE 2) (352 aa)
       
  0.932
Bra022406
AT3G19260 (E=2e-119) LAG1 HOMOLOG 2, LOH2 | LOH2 (LAG ONE HOMOLOGUE 2) (332 aa)
       
  0.932
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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