STRINGSTRING
Bra007876 protein (Brassica rapa) - STRING interaction network
"Bra007876" - AT1G69710 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007876AT1G69710 (E=0.0) | zinc finger protein, putative / regulator of chromosome condensation (RCC1) family protein (1158 aa)    
Predicted Functional Partners:
Bra035562
AT5G55190 (E=9e-121) RAN3, ATRAN3 | RAN3 (RAN GTPASE 3); GTP binding / GTPase/ protein binding ; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (221 aa)
     
  0.780
Bra006530
AT5G20010 (E=2e-118) RAN-1, RAN1, ATRAN1 | RAN-1; GTP binding / GTPase/ protein binding ; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (221 aa)
     
  0.780
Bra002926
AT5G55190 (E=4e-119) RAN3, ATRAN3 | RAN3 (RAN GTPASE 3); GTP binding / GTPase/ protein binding ; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (221 aa)
     
  0.780
Bra027391
AT3G13870 (E=8e-202) RHD3 | RHD3 (ROOT HAIR DEFECTIVE 3); GTP binding (770 aa)
       
 
  0.751
Bra025089
AT5G45160 (E=0.0) | root hair defective 3 GTP-binding (RHD3) family protein ; Probable GTP-binding protein that may be involved in cell development (831 aa)
       
 
  0.751
Bra016026
AT1G72960 (E=0.0) | root hair defective 3 GTP-binding (RHD3) family protein ; Probable GTP-binding protein that may be involved in cell development (1141 aa)
       
 
  0.751
Bra003863
AT1G72960 (E=0.0) | root hair defective 3 GTP-binding (RHD3) family protein ; Probable GTP-binding protein that may be involved in cell development (1200 aa)
       
 
  0.751
Bra001525
AT3G13870 (E=0.0) RHD3 | RHD3 (ROOT HAIR DEFECTIVE 3); GTP binding ; Probable GTP-binding protein that may be involved in cell development (805 aa)
       
 
  0.751
Bra039210
AT2G23740 (E=5e-041) | nucleic acid binding / transcription factor/ zinc ion binding (306 aa)
       
  0.702
Bra040432
AT3G63130 (E=2e-222) RANGAP1 | RANGAP1 (RAN GTPASE ACTIVATING PROTEIN 1); RAN GTPase activator/ protein binding (536 aa)
     
  0.702
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (16%) [HD]