STRINGSTRING
Bra007891 protein (Brassica rapa) - STRING interaction network
"Bra007891" - AT1G69970 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007891AT1G69970 (E=3e-036) CLE26 | CLE26 (CLAVATA3/ESR-RELATED 26); protein binding / receptor binding (104 aa)    
Predicted Functional Partners:
Bra033047
AT3G28455 (E=2e-017) CLE25 | CLE25 (CLAVATA3/ESR-RELATED 25); protein binding / receptor binding (103 aa)
           
  0.604
Bra007868
AT1G69588 (E=7e-039) CLE45 | CLE45 (CLAVATA3/ESR-RELATED 45) (124 aa)
           
  0.603
Bra003992
AT1G69588 (E=2e-040) CLE45 | CLE45 (CLAVATA3/ESR-RELATED 45) (123 aa)
           
  0.603
Bra016015
AT1G73165 (E=2e-028) CLE1 | CLE1 (CLAVATA3/ESR-RELATED 1); protein binding / receptor binding (73 aa)
           
  0.574
Bra036359
AT3G25905 (E=8e-024) CLE27 | CLE27 (CLAVATA3/ESR-RELATED 27); protein binding / receptor binding (80 aa)
           
  0.545
Bra015950
AT1G73965 (E=3e-028) CLE13 | CLE13 (CLAVATA3/ESR-RELATED 13); protein binding / receptor binding (105 aa)
           
  0.544
Bra021695
AT2G31081 (E=5e-026) CLE4 | CLE4 (CLAVATA3/ESR-RELATED 4); protein binding / receptor binding (82 aa)
           
  0.529
Bra006149
AT5G12235 (E=7e-027) CLE22 | CLE22 (CLAVATA3/ESR-RELATED 22); protein binding / receptor binding (101 aa)
           
  0.526
Bra038351
AT1G68795 (E=8e-031) CLE12 | CLE12 (CLAVATA3/ESR-RELATED 12); protein binding / receptor binding (114 aa)
           
  0.505
Bra004337
AT1G68795 (E=9e-027) CLE12 | CLE12 (CLAVATA3/ESR-RELATED 12); protein binding / receptor binding (112 aa)
           
  0.505
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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