STRINGSTRING
Bra007898 protein (Brassica rapa) - STRING interaction network
"Bra007898" - AT1G70160 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007898AT1G70160 (E=8e-285) | unknown protein (526 aa)    
Predicted Functional Partners:
Bra035187
AT1G80360 (E=5e-187) | aminotransferase class I and II family protein (394 aa)
           
  0.479
Bra008478
AT1G80360 (E=6e-179) | aminotransferase class I and II family protein (414 aa)
           
  0.479
Bra003562
AT1G80360 (E=6e-197) | aminotransferase class I and II family protein (394 aa)
           
  0.479
Bra005154
AT2G37860 (E=4e-167) LCD1 | LCD1 (LOWER CELL DENSITY 1) (423 aa)
           
  0.457
Bra002429
AT5G22790 (E=7e-148) RER1 | RER1 (RETICULATA-RELATED 1) (420 aa)
           
  0.457
Bra000024
AT2G37860 (E=2e-167) LCD1 | LCD1 (LOWER CELL DENSITY 1) (426 aa)
           
  0.457
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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