STRINGSTRING
Bra007903 protein (Brassica rapa) - STRING interaction network
"Bra007903" - AT1G24050 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007903AT1G24050 (E=4e-035) | unknown protein (184 aa)    
Predicted Functional Partners:
Bra037969
AT1G54170 (E=4e-192) CID3 | CID3 (CTC-Interacting Domain 3) (594 aa)
       
 
  0.941
Bra021526
AT3G14010 (E=3e-158) CID4 | CID4 (CTC-Interacting Domain 4); protein binding (641 aa)
       
 
  0.941
Bra014367
AT1G54170 (E=7e-119) CID3 | CID3 (CTC-Interacting Domain 3) (538 aa)
       
 
  0.941
Bra001533
AT3G14010 (E=4e-124) CID4 | CID4 (CTC-Interacting Domain 4); protein binding (1029 aa)
       
 
  0.941
Bra033729
AT5G44200 (E=2e-101) CBP20, ATCBP20 | CBP20 (CAP-BINDING PROTEIN 20); RNA binding / RNA cap binding (264 aa)
       
      0.741
Bra011528
AT3G52380 (E=1e-017) CP33, PDE322 | CP33; RNA binding (157 aa)
       
      0.616
Bra033149
AT3G57150 (E=6e-167) NAP57, AtNAP57, CBF5, AtCBF5 | NAP57 (Arabidopsis thaliana homologue of NAP57); pseudouridine synthase (547 aa)
       
      0.612
Bra008756
AT5G14460 (E=2e-220) | pseudouridine synthase/ transporter (522 aa)
       
      0.612
Bra003270
AT3G57150 (E=2e-218) NAP57, AtNAP57, CBF5, AtCBF5 | NAP57 (Arabidopsis thaliana homologue of NAP57); pseudouridine synthase (547 aa)
       
      0.612
Bra030529
AT1G03330 (E=2e-047) | small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative (93 aa)
       
 
  0.527
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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