STRINGSTRING
Bra007912 protein (Brassica rapa) - STRING interaction network
"Bra007912" - AT1G70410 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007912AT1G70410 (E=1e-135) ATBCA4, BCA4 | carbonic anhydrase, putative / carbonate dehydratase, putative ; Reversible hydration of carbon dioxide (258 aa)    
Predicted Functional Partners:
CYN
AT3G23490 (E=1e-084) CYN | CYN (CYANASE); DNA binding / cyanate hydratase/ hydro-lyase ; Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide (168 aa)
       
  0.911
Bra012384
AT1G23730 (E=6e-135) ATBCA3, BCA3 | BCA3 (BETA CARBONIC ANHYDRASE 4); carbonate dehydratase/ zinc ion binding ; Reversible hydration of carbon dioxide (258 aa)
   
 
 
0.899
Bra006942
AT3G52720 (E=8e-140) ATACA1, ACA1 | ACA1 (ALPHA CARBONIC ANHYDRASE 1); carbonate dehydratase/ zinc ion binding (306 aa)
         
  0.753
Bra028796
AT5G04130 (E=0.0) | DNA topoisomerase, ATP-hydrolyzing, putative / DNA topoisomerase II, putative / DNA gyrase, putative ; A type II topoisomerase that negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner (997 aa)
         
  0.753
Bra038791
AT4G20990 (E=3e-127) ATACA4, ACA4 | ACA4 (ALPHA CARBONIC ANHYDRASE 4); carbonate dehydratase/ zinc ion binding (268 aa)
         
  0.733
Bra027010
AT1G08080 (E=6e-107) ATACA7, ACA7 | ACA7 (ALPHA CARBONIC ANHYDRASE 7); carbonate dehydratase/ zinc ion binding (271 aa)
         
  0.733
Bra018660
AT1G08065 (E=5e-121) ATACA5, ACA5 | ACA5 (ALPHA CARBONIC ANHYDRASE 5); carbonate dehydratase/ zinc ion binding (274 aa)
         
  0.733
Bra018657
AT1G08080 (E=1e-126) ATACA7, ACA7 | ACA7 (ALPHA CARBONIC ANHYDRASE 7); carbonate dehydratase/ zinc ion binding (454 aa)
         
  0.733
Bra013487
AT4G20990 (E=2e-102) ATACA4, ACA4 | ACA4 (ALPHA CARBONIC ANHYDRASE 4); carbonate dehydratase/ zinc ion binding (261 aa)
         
  0.733
Bra011969
AT1G08080 (E=3e-111) ATACA7, ACA7 | ACA7 (ALPHA CARBONIC ANHYDRASE 7); carbonate dehydratase/ zinc ion binding (272 aa)
         
  0.733
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (6%) [HD]