STRINGSTRING
Bra007919 protein (Brassica rapa) - STRING interaction network
"Bra007919" - AT1G70505 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007919AT1G70505 (E=9e-122) | unknown protein (353 aa)    
Predicted Functional Partners:
Bra034758
AT3G12380 (E=1e-073) ATARP5 | ATARP5 (ACTIN-RELATED PROTEIN 5); structural constituent of cytoskeleton (412 aa)
           
  0.519
Bra033747
AT5G44520 (E=1e-124) | ribose 5-phosphate isomerase-related (283 aa)
           
  0.519
Bra031702
AT1G10140 (E=3e-049) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- plasma membrane; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Uncharacterised conserved protein UCP031279 (InterPro-IPR016972); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G58420.1); Has 38 Blast hits to 38 proteins in 10 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 5 (source- NCBI BLink). (166 aa)
           
  0.495
Bra027864
AT1G58420 (E=2e-055) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 21 plant structures; EXPRESSED DURING- 11 growth stages; CONTAINS InterPro DOMAIN/s- Uncharacterised conserved protein UCP031279 (InterPro-IPR016972); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G10140.1); Has 28 Blast hits to 28 proteins in 6 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (176 aa)
           
  0.495
Bra019961
AT1G10140 (E=2e-042) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- plasma membrane; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Uncharacterised conserved protein UCP031279 (InterPro-IPR016972); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G58420.1); Has 38 Blast hits to 38 proteins in 10 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 5 (source- NCBI BLink). (170 aa)
           
  0.495
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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