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Bra007922 protein (Brassica rapa) - STRING interaction network
"Bra007922" - AT1G70540 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007922AT1G70540 (E=2e-068) EDA24 | EDA24 (embryo sac development arrest 24); enzyme inhibitor/ pectinesterase/ pectinesterase inhibitor (157 aa)    
Predicted Functional Partners:
Bra032803
AT1G24450 (E=4e-068) NFD2 | NFD2 (NUCLEAR FUSION DEFECTIVE 2); RNA binding / ribonuclease III (165 aa)
           
  0.477
Bra023189
AT1G31470 (E=1e-258) NFD4 | NFD4 (NUCLEAR FUSION DEFECTIVE 4) (580 aa)
           
  0.477
Bra023208
AT1G31817 (E=6e-111) NFD3 | NFD3 (NUCLEAR FUSION DEFECTIVE 3); structural constituent of ribosome (309 aa)
           
  0.418
Bra005392
AT2G34790 (E=3e-273) MEE23, EDA28 | MEE23 (MATERNAL EFFECT EMBRYO ARREST 23); FAD binding / catalytic/ electron carrier/ oxidoreductase (532 aa)
           
  0.408
Bra036489
AT2G20585 (E=7e-027) NFD6 | NFD6 (NUCLEAR FUSION DEFECTIVE 6) (132 aa)
           
  0.406
Bra036442
AT3G03690 (E=4e-141) UNE7 | UNE7 (unfertilized embryo sac 7); acetylglucosaminyltransferase/ transferase, transferring glycosyl groups (281 aa)
           
  0.406
Bra031130
AT2G20585 (E=1e-014) NFD6 | NFD6 (NUCLEAR FUSION DEFECTIVE 6) (101 aa)
           
  0.406
Bra005381
AT2G34920 (E=9e-191) EDA18 | EDA18 (embryo sac development arrest 18); protein binding / zinc ion binding (648 aa)
     
   
  0.404
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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