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Bra007924 protein (Brassica rapa) - STRING interaction network
"Bra007924" - AT1G70560 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007924AT1G70560 (E=7e-192) WEI8, TAA1, SAV3 | TAA1 (TRYPTOPHAN AMINOTRANSFERASE OF ARABIDOPSIS 1); L-alanine-2-oxoglutarate aminotransferase/ L-glutamine-2-oxoglutarate aminotransferase/ L-leucine-2-oxoglutarate aminotransferase/ L-methionine-2-oxoglutarate aminotransferase/ L-phenylalanine-2-oxoglut (381 aa)    
Predicted Functional Partners:
Bra011055
AT4G28720 (E=7e-233) | flavin-containing monooxygenase family protein / FMO family protein (426 aa)
         
  0.919
Bra010354
AT4G28720 (E=5e-229) | flavin-containing monooxygenase family protein / FMO family protein (426 aa)
         
  0.919
Bra033703
AT5G43890 (E=4e-212) YUC5, SUPER1 | YUCCA5; monooxygenase (426 aa)
         
  0.917
Bra032524
AT1G04180 (E=2e-226) | flavin-containing monooxygenase family protein / FMO family protein (422 aa)
         
  0.903
Bra015293
AT1G04180 (E=2e-213) | flavin-containing monooxygenase family protein / FMO family protein (420 aa)
         
  0.900
Bra040081
AT4G32540 (E=3e-213) YUC, YUC1 | YUC1 (YUCCA 1); FAD binding / NADP or NADPH binding / flavin-containing monooxygenase/ oxidoreductase (410 aa)
         
  0.826
Bra011354
AT4G32540 (E=3e-214) YUC, YUC1 | YUC1 (YUCCA 1); FAD binding / NADP or NADPH binding / flavin-containing monooxygenase/ oxidoreductase (418 aa)
         
  0.826
Bra008971
AT5G11320 (E=2e-207) YUC4 | YUC4 (YUCCA4); monooxygenase/ oxidoreductase (411 aa)
         
  0.809
Bra018763
AT1G48910 (E=4e-117) YUC10 | YUC10; FAD binding / monooxygenase/ oxidoreductase (255 aa)
         
  0.805
Bra017913
AT1G21430 (E=3e-162) YUC11 | YUC11; FAD binding / NADP or NADPH binding / flavin-containing monooxygenase/ monooxygenase/ oxidoreductase (378 aa)
         
  0.805
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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